PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_D83DEA9B0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 356aa    MW: 38272.6 Da    PI: 10.8597
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_D83DEA9B0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30290347359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p ++++tYegeH h+
  Traes_5DS_D83DEA9B0.1 290 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPAMLIVTYEGEHSHN 347
                            9************************9888****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-18241286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32276348IPR003657WRKY domain
PROSITE profilePS5081129.482283349IPR003657WRKY domain
SuperFamilySSF1182901.96E-26286348IPR003657WRKY domain
SMARTSM007742.1E-36288348IPR003657WRKY domain
PfamPF031063.9E-26290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEVEAANSA AVESCHKLLA LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGRG  60
GHARGRFSRR RKPVGFLSQK GFLESSSNTP LGMLMSGSAA TPSPSAGSAG QLRPQVGAPP  120
QPRRSLDLIS SSSKSAHQFG PPKMVQPLSV QFQFGATAHR YPFQQQQQNL QAQMFKRSNS  180
GISLKFDSPS GGTGTISSPR SFMSSLSMDG SVASLDGKPP MRLLGGPAVS DPLNVRQCAP  240
KRRCTGRGED GSGKCTTGGK CHCSKRRKLR IKRSIKVPAI SNKISDIPPD EYSWRKYGQK  300
PIKGSPHPRG YYKCSTVRGC PARKHVERCV DEPAMLIVTY EGEHSHNRLP TQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19276350275WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747470.0AK374747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664169.10.0PREDICTED: protein WRKY1
SwissprotQ93WU63e-94WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLW5G4B50.0W5G4B5_WHEAT; Uncharacterized protein
STRINGMLOC_56247.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-61WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]